Paketti: sra-toolkit (2.9.3+dfsg-1 ja muut)

[ Source: sra-sdk  ]

utilities for the NCBI Sequence Read Archive

Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.

The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.

The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.

Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.

Muut pakettiin sra-toolkit liittyvät paketit

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.14)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libfuse2 (>= 2.6)

  Filesystem in Userspace (library)

• dep: libhdf5-103

  Hierarchical Data Format 5 (HDF5) - runtime files - serial version

• dep: libkdf5-2

  hdf5 access to data in the INSDC Sequence Read Archives

• dep: libmagic1 (>= 5.12)

  Recognize the type of data in a file using "magic" numbers - library

• dep: libmbedcrypto3 (>= 2.13)

  lightweight crypto and SSL/TLS library - crypto library

• dep: libmbedtls12 (>= 2.13)

  lightweight crypto and SSL/TLS library - tls library

• dep: libmbedx509-0 (>= 2.0)

  lightweight crypto and SSL/TLS library - x509 certificate library

• dep: libncbi-vdb2

  libraries for using data in the INSDC Sequence Read Archives

• dep: libncbi-wvdb2

  virtual layer update modul of ncbi-vdb library

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: libsz2

  Adaptive Entropy Coding library - SZIP

• dep: libxml2 (>= 2.6.27)

  XML-kirjasto Gnomelle

• dep: zlib1g (>= 1:1.2.2)

  pakkauskirjaston ajonaikaistiedostot

• rec: med-config (>= 2.1)

  Debian Med general config package

Imuroi sra-toolkit

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.9.3+dfsg-1+b1	4,816.5 kt	9,306.0 kt	[tiedostoluettelo]