Paketti: last-align (963-2)

[ Source: last-align  ]

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program

Muut pakettiin last-align liittyvät paketit

• dep: libc6 (>= 2.14)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 6)

  GNU standardi C++ -kirjasto, versio 3

• dep: parallel

  build and execute command lines from standard input in parallel

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

• rec: python

  interactive high-level object-oriented language (Python2 version)

• rec: python-pil

  Python Imaging Library (Pillow fork)

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Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	737.1 kt	3,543.0 kt	[tiedostoluettelo]