Paketti: python-pyfaidx (0.5.5.2-1)

[ Source: python-pyfaidx  ]

efficient random access to fasta subsequences for Python

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 2 modules to access fasta files.

Muut pakettiin python-pyfaidx liittyvät paketit

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python-six

  Python 2 and 3 compatibility library (Python 2 interface)

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	23.3 kt	112.0 kt	[tiedostoluettelo]