Paketti: bandage (0.8.1-4)

[ Source: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Tagit: Interface Toolkit: Qt

Muut pakettiin bandage liittyvät paketit

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 4.0) [ei arm64, mips64el]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 4.2) [arm64, mips64el]

• dep: libqt5core5a (>= 5.14.1)

  Qt 5 core module

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

  tai libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.11.0~rc1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

Imuroi bandage

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	918.9 kt	2,140.0 kt	[tiedostoluettelo]
arm64	849.8 kt	2,026.0 kt	[tiedostoluettelo]
armel	841.1 kt	1,957.0 kt	[tiedostoluettelo]
armhf	844.1 kt	1,569.0 kt	[tiedostoluettelo]
i386	953.4 kt	2,168.0 kt	[tiedostoluettelo]
mips64el	869.4 kt	2,661.0 kt	[tiedostoluettelo]
mipsel	873.8 kt	2,569.0 kt	[tiedostoluettelo]
ppc64el	914.5 kt	2,527.0 kt	[tiedostoluettelo]
s390x	855.3 kt	2,195.0 kt	[tiedostoluettelo]