Software Packages in "experimental", Subsection science

ants (2.1.0+git635-g0752c29-1.1)
advanced normalization tools for brain and image analysis
ariba (2.7.2+ds-1)
Antibiotic Resistance Identification By Assembly
ase (3.13.0-1)
Atomic Simulation Environment
barrnap (0.8+dfsg-1)
rapid ribosomal RNA prediction
beagle (4.1~170121-6cc+dfsg-1)
Genotype calling, genotype phasing and imputation of ungenotyped markers
bio-eagle (2.3.1-1)
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.3.1-1)
Examples for bio-eagle
biosig-tools (1.4.1-1.1+b1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 1.4.1-1.1 [alpha, x32], 1.4.1-1 [sh4])
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-9)
utilities for biological sequence analysis
boinc-app-seti (8.00~svn3643-1~exp3)
SETI@home application for the BOINC client
boinc-app-seti-graphics (8.00~svn3643-1~exp3)
SETI@home application for the BOINC client (with graphics)
caffe-cpu (1.0.0-1)
Fast, open framework for Deep Learning (Meta)
caffe-tools-cpu (1.0.0-1)
Tools for fast, open framework for Deep Learning (CPU_ONLY)
caffe-tools-cuda (1.0.0~rc5-1) [contrib]
Tools for fast, open framework for Deep Learning (CUDA)
cnrun-tools (2.1.0-1)
NeuroML-capable neuronal network simulator (tools)
connectome-workbench (1.2.3+git41-gc4c6c90-1)
brain visualization, analysis and discovery tool
critterding (1.0-beta14+dfsg-2+b3 [amd64, hurd-i386], 1.0-beta14+dfsg-2+b2 [arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 1.0-beta14+dfsg-2+b1 [mips64el, ppc64, x32], 1.0-beta14+dfsg-2 [alpha, hppa, m68k, sparc64])
Evolving Artificial Life
critterding-common (1.0-beta14+dfsg-2+b1)
Evolving Artificial Life - architecture-independent files
datalad (0.5.1-1)
data files crawler and data distribution
dcmtk (3.6.1~20170228-1~exp1)
OFFIS DICOM toolkit command line utilities
elmer (7.0.svn.6034+dfsg-2)
finite element multiphysics suite - binaries
elmer-common (7.0.svn.6034+dfsg-2)
finite element multiphysics suite - architecture-independent files
elmergui-samples (7.0.svn.6034+dfsg-2)
ElmerGUI samples directory
fastaq (3.15.0-1)
FASTA and FASTQ file manipulation tools
flexbar (1:3.0.0-1)
flexible barcode and adapter removal for sequencing platforms
fml-asm (0.1-3)
tool for assembling Illumina short reads in small regions
fxt-tools (0.3.3-1)
Multithreaded tracing library
gdal-bin (2.2.0~beta2+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64], 2.1.3+dfsg-1~exp2 [hurd-i386])
Geospatial Data Abstraction Library - Utility programs
gdal-data (2.2.0~beta2+dfsg-1~exp1)
Geospatial Data Abstraction Library - Data files
geographiclib-tools (1.48-1~exp1)
C++ library to solve some geodesic problems -- tools
ginkgocadx (3.8.5-1~exp1)
Medical Imaging Software and complete DICOM Viewer
gmt (5.3.3+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 5.3.2+dfsg-1~exp1 [hurd-i386])
Generic Mapping Tools
gmt-common (5.3.3+dfsg-1~exp1)
Generic Mapping Tools - Architecture-independent files
gpaw (1.2.0-1)
DFT and beyond within the projector-augmented wave method
grass (7.2.1~rc2-1~exp1)
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.2.1~rc2-1~exp1)
GRASS GIS core components
grass-gui (7.2.1~rc2-1~exp1)
GRASS GIS graphical user interfaces
gromacs (2016.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 2016.2-1 [x32])
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2016.3-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (2016.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 2016.2-1 [x32])
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (2016.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 2016.2-1 [x32])
Molecular dynamics sim, binaries for OpenMPI parallelization
hmmer2 (2.3.2+dfsg-2)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2+dfsg-2)
HMMER programs with PVM (Parallel Virtual Machine) support
itksnap (3.6.0-1~exp1)
semi-automatic segmentation of structures in 3D images
libcnrun2 (2.1.0-1)
NeuroML-capable neuronal network simulator (shared lib)
libeccodes-data (2.1.0-1)
GRIB and BUFR enecoding/encoding software library - data
liblas-bin (1.8.1-4~exp2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 1.8.1-4~exp1 [hurd-i386])
ASPRS LiDAR data translation toolset
libncarg-bin (6.4.0-1)
NCAR command-language library - development tools
libncarg-data (6.4.0-1)
NCAR command-language library - Data
libotb (5.10.1+dfsg-1~exp1)
ORFEO Toolbox library metapackage
libotb-apps (5.10.1+dfsg-1~exp1)
Plugins for ORFEO Toolbox applications
libqgis-customwidgets (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
QGIS custom widgets for Qt Designer
libqgis-server2.14.12 (2.14.12+dfsg-1~exp1)
QGIS - shared server library
libqgis-server2.14.13 (2.14.13+dfsg-1~exp1)
QGIS - shared server library
libssm-bin (1.4.0-1~exp1)
macromolecular superposition library - binaries
libvcflib-tools (1.0.0~rc1+dfsg1-4)
C++ library for parsing and manipulating VCF files (tools)
lua-cnrun (2.1.0-1)
NeuroML-capable neuronal network simulator (Lua package)
lua-torch-cutorch (0~20170202-g64536bc-1) [contrib]
CUDA backend for Torch framework
m2m-aligner (1.2-2)
many-to-many alignments for string transduction
metview (4.8.4-1 [amd64], 4.8.3-1 [arm64, armel, armhf, i386, m68k, mips, mips64el, mipsel, ppc64el, s390x])
Interactive data visualization and analysis environment,
metview-data (4.8.4-1)
Data needed for the Metview data analysis environment
mia-doctools (2.4.4-1~exp2)
Helper scripts for run-time document creation
mia-tools (2.4.4-1~exp2)
Command line tools for gray scale image processing
ncl-ncarg (6.4.0-1)
NCAR Command Language and NCAR graphics
nco (4.6.6-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64, x32], 4.6.5-1~exp1 [hurd-i386])
Command-line operators to analyze netCDF files
ncview (2.1.8+ds-1~exp1)
X11 visual browser for NetCDF format files
octave-biosig (1.4.1-1.1+b1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 1.4.1-1.1 [alpha, x32], 1.4.1-1 [sh4])
Octave bindings for BioSig library
openbabel (2.4.1-1)
Chemical toolbox utilities (cli)
openbabel-gui (2.4.1-1)
Chemical toolbox utilities (graphical user interface)
opticalraytracer (3.2-2)
Virtual lens design workshop
otb-bin (5.10.1+dfsg-1~exp1)
ORFEO Toolbox command line applications
otb-bin-qt (5.10.1+dfsg-1~exp1)
ORFEO Toolbox graphical user interface applications
otb-testdriver (5.10.1+dfsg-1~exp1)
ORFEO Toolbox library - OTBTestDriver
phonetisaurus (0.7.8-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.7.8-6 [mips, mipsel])
Grapheme to Phoneme conversion tool
plink1.9 (1.90~b4.1-170330-1)
whole-genome association analysis toolset
pnetcdf-bin (1.8.1-1)
Programs for reading and writing parallel NetCDF files
praat (6.0.26-1)
program for speech analysis and synthesis
prank (0.0.150803-3)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
proj-bin (4.9.3-2~exp1)
Cartographic projection library (tools)
python3-keras (1.0.7-1)
deep learning framework running on Theano or TensorFlow
qgis (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
Geographic Information System (GIS)
qgis-api-doc (2.14.13+dfsg-1~exp1)
QGIS API documentation
qgis-common (2.14.13+dfsg-1~exp1)
QGIS - architecture-independent data
qgis-plugin-grass (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
GRASS plugin for QGIS
qgis-plugin-grass-common (2.14.13+dfsg-1~exp1)
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
GRASS provider for QGIS
qgis-providers (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
collection of data providers to QGIS
qgis-providers-common (2.14.13+dfsg-1~exp1)
collection of data providers to QGIS - architecture-independent files
qgis-server (2.14.13+dfsg-1~exp1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.12+dfsg-1~exp1 [hurd-i386])
QGIS server providing various OGC services
qmapshack (1.8.0-1~exp1)
GPS mapping (GeoTiff and vector) and GPSr management
samtools (1.4-1+b1)
processing sequence alignments in SAM and BAM formats
samtools-test (1.4-1)
test files for the samtools package
sequitur-g2p (0+r1668.r3-1)
Grapheme to Phoneme conversion tool
smithwaterman (0.0+20160702-2)
determine similar regions between two strings or genomic sequences
spades (3.10.1+dfsg-1)
genome assembler for single-cell and isolates data sets
spatialite-bin (4.4.0~rc1-1~exp1+b1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 4.4.0~rc1-1~exp1 [alpha, kfreebsd-amd64, kfreebsd-i386, m68k, powerpcspe, sparc64, x32])
Geospatial extension for SQLite - tools
sump-logicanalyzer (0.8-1)
GUI controlling multiple logic analysers
tabix (1.4-1)
generic indexer for TAB-delimited genome position files
therion (5.4.0ds1-1)
Cave surveying - 2D and 3D drawing software
therion-viewer (5.4.0ds1-1)
Cave surveying - 3D viewer for therion models
tinysvm (0.09+dfsg-2)
SVM trainer and classifier toolkit
tunnelx (20160713-4)
Cave Survey drawing software
tvc (5.0.3+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 5.0.3+dfsg-1 [sparc64])
genetic variant caller for Ion Torrent sequencing platforms
ubertooth (2017.03.R2-1~exp2)
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2017.03.R2-1~exp2)
Firmware for Ubertooth
ubertooth-firmware-source (2017.03.R2-1~exp2)
Source code for the Ubertooth firmware
velvet (1.2.10+dfsg1-4)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-4)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-4)
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-4)
Test data for the Velvet sequence assembler
yamcha (0.33-1)
general purpose chunker annotator
yorick-optimpack (1.4.0~pre1+dfsg-1~exp0)
optimization of large scale problems for the Yorick language
zimpl (3.3.4-1)
mathematical modeling language for optimization problems