Package: freebayes (1.3.7-1~exp and others)

[ Source: freebayes  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Bayesian haplotype-based polymorphism discovery and genotyping

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

Other Packages Related to freebayes

• dep: libc6 (>= 2.34) [not ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, ppc64, ppc64el, sh4]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libseqlib2 (>= 1.2.0) [amd64]

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  dep: libseqlib2 (>= 1.2.0+dfsg) [not amd64]

• dep: libstdc++6 (>= 11) [armel, armhf, i386, riscv64, s390x, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [not armel, armhf, i386, riscv64, s390x, sparc64]

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libvcflib1 (>= 1.0.3+dfsg) [not amd64, arm64, mips64el, ppc64el, riscv64]

  C++ library for parsing and manipulating VCF files

  dep: libvcflib1 (>= 1.0.9+dfsg) [riscv64]

• dep: libvcflib2 (>= 1.0.9+dfsg1) [amd64, arm64, mips64el, ppc64el]

  C++ library for parsing and manipulating VCF files

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: parallel

  build and execute command lines from standard input in parallel

Download freebayes

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.7-1~exp+b1	1,453.0 kB	4,027.0 kB	[list of files]
arm64	1.3.7-1~exp+b1	1,397.1 kB	3,922.0 kB	[list of files]
armel	1.3.7-1~exp	1,378.4 kB	3,821.0 kB	[list of files]
armhf	1.3.7-1~exp	1,386.2 kB	3,445.0 kB	[list of files]
i386	1.3.7-1~exp	1,502.3 kB	4,185.0 kB	[list of files]
ia64 (unofficial port)	1.3.7-1~exp+b1	1,573.9 kB	5,599.0 kB	[list of files]
m68k (unofficial port)	1.3.7-1~exp+b1	1,404.1 kB	3,930.0 kB	[list of files]
mips64el	1.3.7-1~exp+b1	1,428.4 kB	4,378.0 kB	[list of files]
ppc64 (unofficial port)	1.3.7-1~exp+b1	1,455.3 kB	4,498.0 kB	[list of files]
ppc64el	1.3.7-1~exp+b1	1,473.5 kB	4,307.0 kB	[list of files]
riscv64 (unofficial port)	1.3.7-1~exp	1,435.6 kB	3,701.0 kB	[list of files]
s390x	1.3.7-1~exp	1,375.9 kB	4,052.0 kB	[list of files]
sh4 (unofficial port)	1.3.7-1~exp+b1	1,533.1 kB	3,916.0 kB	[list of files]
sparc64 (unofficial port)	1.3.7-1~exp	1,357.1 kB	4,639.0 kB	[list of files]