Package: skesa (2.4.0-6 and others)

[ Source: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

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• dep: libboost-iostreams1.83.0 (>= 1.83.0) [not x32]

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• dep: libboost-program-options1.83.0 (>= 1.83.0) [not x32]

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• dep: libboost-timer1.83.0 (>= 1.83.0) [not x32]

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• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.0)

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• dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]

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• dep: libncbi-vdb3 (>= 3.0.2+dfsg) [not x32]

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• dep: libngs-c++3 (>= 3.0.3+dfsg) [not x32]

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  dep: libstdc++6 (>= 13.1) [amd64]

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Download skesa

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.4.0-6+b2	558.0 kB	2,350.0 kB	[list of files]
arm64	2.4.0-6+b3	568.5 kB	2,230.0 kB	[list of files]
x32 (unofficial port)	2.4.0-4	631.9 kB	2,448.0 kB	[list of files]