Package: apbs (3.4.1-5.1 and others)

[ Source: apbs  ]

Adaptive Poisson Boltzmann Solver

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including:

  * simulation of diffusional processes to determine ligand-protein and
    protein-protein binding kinetics,
  * implicit solvent molecular dynamics of biomolecules ,
  * solvation and binding energy calculations to determine
    ligand-protein and protein-protein equilibrium binding constants
    and aid in rational drug design,
  * and biomolecular titration studies.

APBS was designed to efficiently evaluate electrostatic properties for such simulations for a wide range of length scales to enable the investigation of molecules with tens to millions of atoms.

This package contains the apbs program and utilities.

Tags: Field: Chemistry, Implemented in: C, User Interface: interface::commandline, role::program, Scope: Utility

Other Packages Related to apbs

• dep: apbs-data (= 3.4.1-5.1)

  data files for APBS (Adaptive Poisson Boltzmann Solver)

• dep: libamd3 (>= 1:7.0.1)

  approximate minimum degree ordering library for sparse matrices

• dep: libapbs3t64 (= 3.4.1-5.1) [m68k, sh4]

  Adaptive Poisson Boltzmann Solver

  dep: libapbs3t64 (= 3.4.1-5.1+b1) [not m68k, sh4]

• dep: libarpack2 (>= 2.1) [ia64]

  Fortran77 subroutines to solve large scale eigenvalue problems

• dep: libarpack2t64 (>= 2.1) [not ia64]

  Fortran77 subroutines to solve large scale eigenvalue problems

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcamd3 (>= 1:7.0.1)

  symmetric approximate minimum degree library for sparse matrices

• dep: libccolamd3 (>= 1:7.0.1)

  constrained column approximate library for sparse matrices

• dep: libcholmod5 (>= 1:7.3.1)

  sparse Cholesky factorization library for sparse matrices

• dep: libcolamd3 (>= 1:7.0.1)

  column approximate minimum degree ordering library for sparse matrices

• dep: libfetk1.9t64 (>= 3.4.1)

  FETK libraries for APBS (shared libraries)

• dep: libgomp1 (>= 4.2.1)

  biblioteca para uso de OpenMP en GCC (GOMP)

• dep: libjs-mathjax

  JavaScript display engine for LaTeX and MathML

• dep: libmaloc1 (>= 0.2-1)

  Object-oriented Abstraction Layer for C

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: libspqr4 (>= 1:7.6.1+dfsg) [not sh4]

  sparse QR factorization library

  dep: libspqr4 (>= 1:7.7.0+dfsg) [sh4]

• dep: libstdc++6 (>= 4.1.1)

  biblioteca estándar de C++ de GNU v3

• dep: libsuitesparseconfig7 (>= 1:7.0.1)

  configuration routines for all SuiteSparse modules

• dep: libsuperlu6 (>= 6.0.1+dfsg1)

  Direct solution of large, sparse systems of linear equations

• dep: libumfpack6 (>= 1:7.0.1)

  sparse LU factorization library

Download apbs

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.4.1-5.1+b1	77.6 kB	1,253.0 kB	[list of files]
amd64	3.4.1-5.1+b1	76.5 kB	369.0 kB	[list of files]
arm64	3.4.1-5.1+b1	74.7 kB	1,253.0 kB	[list of files]
armel	3.4.1-5.1+b1	75.8 kB	315.0 kB	[list of files]
armhf	3.4.1-5.1+b1	72.7 kB	263.0 kB	[list of files]
hppa (unofficial port)	3.4.1-5.1+b1	80.1 kB	305.0 kB	[list of files]
i386	3.4.1-5.1+b1	75.7 kB	359.0 kB	[list of files]
ia64 (unofficial port)	3.4.1-5.1+b1	88.2 kB	384.0 kB	[list of files]
m68k (unofficial port)	3.4.1-5.1	75.3 kB	314.0 kB	[list of files]
mips64el	3.4.1-5.1+b1	76.7 kB	1,254.0 kB	[list of files]
ppc64 (unofficial port)	3.4.1-5.1+b1	81.9 kB	1,253.0 kB	[list of files]
ppc64el	3.4.1-5.1+b1	80.7 kB	1,253.0 kB	[list of files]
riscv64	3.4.1-5.1+b1	76.8 kB	309.0 kB	[list of files]
s390x	3.4.1-5.1+b1	74.3 kB	312.0 kB	[list of files]
sh4 (unofficial port)	3.4.1-5.1	86.0 kB	1,234.0 kB	[list of files]
sparc64 (unofficial port)	3.4.1-5.1+b1	82.2 kB	18,538.0 kB	[list of files]
x32 (unofficial port)	3.4.1-5.1+b1	76.1 kB	343.0 kB	[list of files]