Package: libssw0 (1.1-13)

[ Source: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Tags: Role: Shared Library

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Architecture	Package Size	Installed Size	Files
amd64	19.2 kB	55.0 kB	[list of files]
arm64	18.1 kB	51.0 kB	[list of files]
armel	20.5 kB	59.0 kB	[list of files]
armhf	20.7 kB	51.0 kB	[list of files]
i386	26.5 kB	83.0 kB	[list of files]
mips64el	26.1 kB	77.0 kB	[list of files]
mipsel	25.7 kB	72.0 kB	[list of files]
ppc64el	19.4 kB	83.0 kB	[list of files]
s390x	23.2 kB	71.0 kB	[list of files]