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[ Source: sibsim4  ]

Package: sibsim4 (0.20-1)

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align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Searching, Supports Format: Plain Text

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Download sibsim4

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 34.0 kB108.0 kB [list of files]
armel 34.0 kB104.0 kB [list of files]
i386 32.1 kB96.0 kB [list of files]
ia64 49.6 kB156.0 kB [list of files]
kfreebsd-amd64 34.0 kB82.0 kB [list of files]
kfreebsd-i386 32.0 kB74.0 kB [list of files]
mips 35.2 kB116.0 kB [list of files]
mipsel 35.5 kB112.0 kB [list of files]
powerpc 34.5 kB108.0 kB [list of files]
s390 34.6 kB108.0 kB [list of files]
sparc 32.2 kB104.0 kB [list of files]