all options
squeeze  ] [  wheezy  ] [  jessie  ] [  sid  ]
[ Source: hmmer  ]

Package: hmmer (2.3.2-5)

Links for hmmer

Screenshot

Debian Resources:

Download Source Package hmmer:

Maintainers:

External Resources:

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

  • depends
  • recommends
  • suggests
  • enhances

Download hmmer

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,191.2 kB2,512.0 kB [list of files]
armel 1,120.2 kB2,280.0 kB [list of files]
i386 1,075.6 kB2,264.0 kB [list of files]
ia64 1,916.9 kB5,340.0 kB [list of files]
kfreebsd-amd64 1,190.1 kB2,618.0 kB [list of files]
kfreebsd-i386 1,069.7 kB2,362.0 kB [list of files]
mips 1,225.8 kB3,052.0 kB [list of files]
mipsel 1,230.7 kB3,052.0 kB [list of files]
powerpc 1,214.9 kB2,588.0 kB [list of files]
s390 1,139.9 kB2,368.0 kB [list of files]
sparc 1,069.2 kB2,272.0 kB [list of files]