Package: repeatmasker-recon (1.08-8)

[ Source: repeatmasker-recon  ]

finds repeat families from biological sequences

The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences.

The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.

Other Packages Related to repeatmasker-recon

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

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Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	82.2 kB	656.0 kB	[list of files]
amd64	83.1 kB	460.0 kB	[list of files]
arm64	81.1 kB	656.0 kB	[list of files]
armel	80.6 kB	451.0 kB	[list of files]
armhf	77.9 kB	407.0 kB	[list of files]
hppa (unofficial port)	81.0 kB	442.0 kB	[list of files]
i386	84.9 kB	471.0 kB	[list of files]
ia64 (unofficial port)	87.8 kB	533.0 kB	[list of files]
m68k (unofficial port)	76.6 kB	427.0 kB	[list of files]
mips64el	84.6 kB	669.0 kB	[list of files]
ppc64 (unofficial port)	85.4 kB	656.0 kB	[list of files]
ppc64el	85.3 kB	656.0 kB	[list of files]
riscv64	83.1 kB	432.0 kB	[list of files]
s390x	81.2 kB	456.0 kB	[list of files]
sh4 (unofficial port)	79.8 kB	651.0 kB	[list of files]
sparc64 (unofficial port)	79.1 kB	5,460.0 kB	[list of files]
x32 (unofficial port)	82.5 kB	455.0 kB	[list of files]