Package: libbio-db-hts-perl (3.01-4 and others)

[ Source: libbio-db-hts-perl  ]

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

Other Packages Related to libbio-db-hts-perl

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.22) [ppc64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: perl (>= 5.38.2-3.2) [not armhf]

  Larry Wall's Practical Extraction and Report Language

  dep: perl (>= 5.38.2-3.2+b1) [armhf]

• dep: perlapi-5.38.2 [not armel, armhf, hppa, m68k, sh4, x32]

  virtual package provided by perl-base

• dep: perlapi-5.38.2t64 [armel, armhf, hppa, m68k, sh4, x32]

  virtual package provided by perl-base

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

Download libbio-db-hts-perl

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.01-4+b3	131.7 kB	536.0 kB	[list of files]
amd64	3.01-4+b3	135.8 kB	426.0 kB	[list of files]
arm64	3.01-4+b3	130.5 kB	533.0 kB	[list of files]
armel	3.01-4+b3	132.4 kB	413.0 kB	[list of files]
armhf	3.01-4+b3	131.4 kB	373.0 kB	[list of files]
hppa (unofficial port)	3.01-4+b3	135.2 kB	455.0 kB	[list of files]
i386	3.01-4+b3	137.1 kB	441.0 kB	[list of files]
ia64 (unofficial port)	3.01-4+b3	145.4 kB	615.0 kB	[list of files]
m68k (unofficial port)	3.01-4+b3	131.1 kB	421.0 kB	[list of files]
mips64el	3.01-4+b3	126.1 kB	542.0 kB	[list of files]
ppc64 (unofficial port)	3.01-4+b3	133.8 kB	535.0 kB	[list of files]
ppc64el	3.01-4+b3	133.3 kB	534.0 kB	[list of files]
riscv64	3.01-4+b2	136.2 kB	397.0 kB	[list of files]
s390x	3.01-4+b3	136.2 kB	439.0 kB	[list of files]
sh4 (unofficial port)	3.01-4+b3	137.5 kB	470.0 kB	[list of files]
sparc64 (unofficial port)	3.01-4+b3	128.3 kB	2,332.0 kB	[list of files]
x32 (unofficial port)	3.01-4+b3	135.7 kB	421.0 kB	[list of files]