Package: belvu (4.44.1+dfsg-7.1 and others)

[ Source: seqtools  ]

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Tags: Interface Toolkit: GTK

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Download belvu

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.44.1+dfsg-7.1	1,028.7 kB	1,277.0 kB	[list of files]
amd64	4.44.1+dfsg-7.1+b1	1,030.2 kB	1,231.0 kB	[list of files]
arm64	4.44.1+dfsg-7.1+b1	1,019.6 kB	1,275.0 kB	[list of files]
armel	4.44.1+dfsg-7.1+b1	1,013.9 kB	1,190.0 kB	[list of files]
armhf	4.44.1+dfsg-7.1+b1	1,014.1 kB	1,138.0 kB	[list of files]
hppa (unofficial port)	4.44.1+dfsg-7.1	1,026.4 kB	1,221.0 kB	[list of files]
i386	4.44.1+dfsg-7.1+b1	1,038.7 kB	1,262.0 kB	[list of files]
ia64 (unofficial port)	4.44.1+dfsg-7.1	1,051.1 kB	1,457.0 kB	[list of files]
m68k (unofficial port)	4.44.1+dfsg-7.1	1,028.3 kB	1,241.0 kB	[list of files]
mips64el	4.44.1+dfsg-7.1+b1	1,032.6 kB	1,360.0 kB	[list of files]
ppc64 (unofficial port)	4.44.1+dfsg-7.1	1,037.5 kB	1,338.0 kB	[list of files]
ppc64el	4.44.1+dfsg-7.1+b1	1,037.4 kB	1,339.0 kB	[list of files]
riscv64	4.44.1+dfsg-7.1+b1	1,027.4 kB	1,191.0 kB	[list of files]
s390x	4.44.1+dfsg-7.1+b1	1,025.0 kB	1,247.0 kB	[list of files]
sh4 (unofficial port)	4.44.1+dfsg-7.1	1,042.5 kB	1,274.0 kB	[list of files]
sparc64 (unofficial port)	4.44.1+dfsg-7.1	1,014.9 kB	1,990.0 kB	[list of files]
x32 (unofficial port)	4.44.1+dfsg-7.1	1,029.8 kB	1,213.0 kB	[list of files]