Package: primer3 (2.6.1-4 and others)

[ Source: primer3  ]

tool to design flanking oligo nucleotides for DNA amplification

Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as criteria oligonucleotide melting temperature, size, GC content and primer-dimer possibilities, PCR product size, positional constraints within the source sequence, and miscellaneous other constraints. All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to primer3

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: ncbi-epcr

  Tool to test a DNA sequence for the presence of sequence tagged sites

• enh: emboss

  European molecular biology open software suite

Download primer3

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.6.1-4	200.4 kB	987.0 kB	[list of files]
amd64	2.6.1-4	196.8 kB	802.0 kB	[list of files]
arm64	2.6.1-4	179.3 kB	922.0 kB	[list of files]
armel	2.6.1-4	185.7 kB	918.0 kB	[list of files]
armhf	2.6.1-4	177.7 kB	790.0 kB	[list of files]
hppa (unofficial port)	2.6.1-4	190.1 kB	765.0 kB	[list of files]
i386	2.6.1-4	199.3 kB	834.0 kB	[list of files]
ia64 (unofficial port)	2.6.1-4	230.2 kB	1,241.0 kB	[list of files]
m68k (unofficial port)	2.6.1-4	179.3 kB	758.0 kB	[list of files]
mips64el	2.6.1-4	189.0 kB	1,006.0 kB	[list of files]
ppc64 (unofficial port)	2.6.1-4	193.9 kB	986.0 kB	[list of files]
ppc64el	2.6.1-4	195.4 kB	986.0 kB	[list of files]
riscv64	2.6.1-4+b1	196.0 kB	695.0 kB	[list of files]
s390x	2.6.1-4	177.8 kB	762.0 kB	[list of files]
sh4 (unofficial port)	2.6.1-4	225.9 kB	918.0 kB	[list of files]
sparc64 (unofficial port)	2.6.1-4	181.4 kB	4,445.0 kB	[list of files]
x32 (unofficial port)	2.6.1-4	196.9 kB	794.0 kB	[list of files]