Package: libjellyfish-perl (2.3.1-3 and others)

[ Source: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Tags: Software Development: Perl Development, Libraries, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

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Architecture	Version	Package Size	Installed Size	Files
amd64	2.3.1-3+b3	55.0 kB	177.0 kB	[list of files]
arm64	2.3.1-3+b3	49.9 kB	229.0 kB	[list of files]
hppa (unofficial port)	2.3.1-2+b1	65.9 kB	219.0 kB	[list of files]
ia64 (unofficial port)	2.3.0-12	67.0 kB	299.0 kB	[list of files]
mips64el	2.3.1-3+b4	48.5 kB	234.0 kB	[list of files]
ppc64el	2.3.1-3+b4	54.0 kB	229.0 kB	[list of files]
riscv64	2.3.1-3+b4	54.9 kB	153.0 kB	[list of files]