Package: ont-fast5-api (4.1.1+dfsg-3 and others)

[ Source: ont-fast5-api  ]

simple interface to HDF5 files of the Oxford Nanopore .fast5 file format

Ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format.

It provides:

 * Concrete implementation of the fast5 file schema using the generic h5py
   library
 * Plain-english-named methods to interact with and reflect the fast5 file
   schema
 * Tools to convert between multi_read and single_read formats
 * Tools to compress/decompress raw data in files

Other Packages Related to ont-fast5-api

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [not hppa, ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.4) [hppa, ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libvbz-hdf-plugin-dev

  VBZ compression plugin for nanopore signal data (devel)

• dep: libzstd1 (>= 1.5.2) [hppa, ia64]

  fast lossless compression algorithm

  dep: libzstd1 (>= 1.5.5) [not hppa, ia64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [hppa]

  dep: python3 (<< 3.12) [ia64, x32]

  dep: python3 (<< 3.13) [not hppa, ia64, x32]

  dep: python3 (>= 3.10~) [hppa]

  dep: python3 (>= 3.11~) [not hppa]

• dep: python3-h5py (>= 2.10) [not hppa]

  general-purpose Python interface to hdf5

• dep: python3-h5py-serial [hppa]

  general-purpose Python interface to hdf5 (Python 3 serial)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-progressbar

  text progress bar library for Python (Python 3)

Download ont-fast5-api

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.1.1+dfsg-3+b1	48.4 kB	351.0 kB	[list of files]
amd64	4.1.1+dfsg-3+b1	50.3 kB	319.0 kB	[list of files]
arm64	4.1.1+dfsg-3+b1	48.0 kB	351.0 kB	[list of files]
armel	4.1.1+dfsg-3+b1	46.5 kB	269.0 kB	[list of files]
armhf	4.1.1+dfsg-3+b1	46.9 kB	261.0 kB	[list of files]
hppa (unofficial port)	4.0.2+dfsg-1+b1	48.4 kB	240.0 kB	[list of files]
i386	4.1.1+dfsg-3+b1	48.9 kB	277.0 kB	[list of files]
ia64 (unofficial port)	4.1.1+dfsg-2	50.4 kB	261.0 kB	[list of files]
m68k (unofficial port)	4.1.1+dfsg-3+b1	47.2 kB	269.0 kB	[list of files]
mips64el	4.1.1+dfsg-3+b1	48.2 kB	355.0 kB	[list of files]
ppc64el	4.1.1+dfsg-3+b1	49.7 kB	351.0 kB	[list of files]
riscv64	4.1.1+dfsg-3+b2	48.9 kB	271.0 kB	[list of files]
sh4 (unofficial port)	4.1.1+dfsg-3+b1	49.7 kB	349.0 kB	[list of files]
x32 (unofficial port)	4.1.1+dfsg-3	49.7 kB	258.0 kB	[list of files]