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[ Source: ncbi-seg  ]

Package: ncbi-seg (0.0.20000620-6 and others)

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tool to mask segments of low compositional complexity in amino acid sequences

ncbi-seg (a.k.a. SEG) is a program for identifying and masking segments of low compositional complexity in amino acid sequences.

ncbi-seg divides sequences into contrasting segments of low-complexity and high-complexity. Low-complexity segments defined by the algorithm represent "simple sequences" or "compositionally-biased regions".

This program is inappropriate for masking nucleotide sequences and, in fact, may strip some nucleotide ambiguity codes from nt. sequences as they are being read.

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Download ncbi-seg

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.0.20000620-6 83.2 kB146.0 kB [list of files]
amd64 0.0.20000620-6 82.7 kB142.0 kB [list of files]
arm64 0.0.20000620-6 82.0 kB138.0 kB [list of files]
armel 0.0.20000620-6 82.2 kB137.0 kB [list of files]
armhf 0.0.20000620-6 80.6 kB129.0 kB [list of files]
hppa (unofficial port) 0.0.20000620-6 81.7 kB138.0 kB [list of files]
i386 0.0.20000620-6 83.4 kB145.0 kB [list of files]
ia64 (unofficial port) 0.0.20000620-6 86.8 kB159.0 kB [list of files]
m68k (unofficial port) 0.0.20000620-6 80.8 kB137.0 kB [list of files]
mips64el 0.0.20000620-6 83.0 kB149.0 kB [list of files]
ppc64 (unofficial port) 0.0.20000620-6 85.6 kB178.0 kB [list of files]
ppc64el 0.0.20000620-6 84.3 kB178.0 kB [list of files]
riscv64 0.0.20000620-6+b1 81.9 kB134.0 kB [list of files]
s390x 0.0.20000620-6 82.1 kB142.0 kB [list of files]
sh4 (unofficial port) 0.0.20000620-6 82.5 kB133.0 kB [list of files]
sparc64 (unofficial port) 0.0.20000620-6 81.3 kB139.0 kB [list of files]
x32 (unofficial port) 0.0.20000620-6 82.4 kB141.0 kB [list of files]