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[ Source: htslib  ]

Package: libhts2 (1.9-11)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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Download libhts2

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 324.4 kB898.0 kB [list of files]
amd64 297.9 kB744.0 kB [list of files]
arm64 270.6 kB688.0 kB [list of files]
armel 252.3 kB636.0 kB [list of files]
armhf 255.2 kB468.0 kB [list of files]
hppa (unofficial port) 301.5 kB798.0 kB [list of files]
m68k (unofficial port) 261.0 kB660.0 kB [list of files]
mips 275.2 kB781.0 kB [list of files]
mips64el 272.8 kB813.0 kB [list of files]
mipsel 277.5 kB777.0 kB [list of files]
powerpcspe (unofficial port) 273.4 kB756.0 kB [list of files]
ppc64 (unofficial port) 321.9 kB1,013.0 kB [list of files]
ppc64el 331.4 kB1,013.0 kB [list of files]
riscv64 (unofficial port) 272.5 kB538.0 kB [list of files]
s390x 272.6 kB784.0 kB [list of files]
sh4 (unofficial port) 329.3 kB619.0 kB [list of files]
sparc64 (unofficial port) 259.9 kB712.0 kB [list of files]
x32 (unofficial port) 294.1 kB712.0 kB [list of files]