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[ Source: libedlib  ]

Package: libedlib0 (1.2.6-1)

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library for sequence alignment using edit distance

A lightweight and super fast C/C++ library for sequence alignment using edit distance.

Calculating edit distance of two strings is as simple as:

 edlibAlign("hello", 5, "world!", 6,

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

This package contains the shared library.

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 15.5 kB50.0 kB [list of files]
amd64 15.3 kB45.0 kB [list of files]
arm64 14.9 kB41.0 kB [list of files]
armel 13.1 kB41.0 kB [list of files]
armhf 13.2 kB33.0 kB [list of files]
hppa (unofficial port) 16.5 kB46.0 kB [list of files]
i386 15.9 kB45.0 kB [list of files]
m68k (unofficial port) 15.0 kB41.0 kB [list of files]
mips64el 15.0 kB42.0 kB [list of files]
mipsel 15.6 kB46.0 kB [list of files]
ppc64 (unofficial port) 16.4 kB81.0 kB [list of files]
ppc64el 18.2 kB81.0 kB [list of files]
riscv64 (unofficial port) 14.0 kB37.0 kB [list of files]
s390x 14.8 kB45.0 kB [list of files]
sh4 (unofficial port) 16.9 kB41.0 kB [list of files]
sparc64 (unofficial port) 13.6 kB42.0 kB [list of files]
x32 (unofficial port) 15.2 kB45.0 kB [list of files]