Package: surankco (0.0.r5+dfsg-4)

[ Source: surankco  ]

Supervised Ranking of Contigs in de novo Assemblies

SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet.

Other Packages Related to surankco

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-optparse

  GNU/R Command line option parser

• dep: r-cran-randomforest

  GNU R package implementing the random forest classificator

Download surankco

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	77.6 kB	159.0 kB	[list of files]