Package: r-bioc-genomicranges (1.54.1+dfsg-1 and others)

[ Source: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Other Packages Related to r-bioc-genomicranges

• dep: libc6 (>= 2.16) [x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [not alpha, arm64, hppa, ia64, ppc64el, riscv64, sh4, x32]

• dep: r-api-4.0

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• dep: r-api-bioc-3.18

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• dep: r-bioc-biocgenerics (>= 0.37.0)

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• dep: r-bioc-genomeinfodb (>= 1.15.2)

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• dep: r-bioc-iranges (>= 2.31.2)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.27.12)

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• dep: r-bioc-xvector (>= 0.29.2)

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• sug: r-bioc-annotate

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• sug: r-bioc-annotationdbi

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• sug: r-bioc-annotationhub

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• sug: r-bioc-biobase

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• sug: r-bioc-biocstyle

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• sug: r-bioc-biostrings (>= 2.25.3)

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• sug: r-bioc-bsgenome

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• sug: r-bioc-deseq2 [not m68k]

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• sug: r-bioc-dexseq

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• sug: r-bioc-edger

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• sug: r-bioc-genomicalignments

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• sug: r-bioc-genomicfeatures

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• sug: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-keggrest

  GNU R client-side REST access to KEGG

• sug: r-bioc-rsamtools (>= 1.13.53)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

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Download r-bioc-genomicranges

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.54.1+dfsg-1	1,783.9 kB	2,804.0 kB	[list of files]
amd64	1.54.1+dfsg-1	1,783.9 kB	2,789.0 kB	[list of files]
arm64	1.54.1+dfsg-1	1,783.5 kB	2,805.0 kB	[list of files]
armel	1.54.1+dfsg-1	1,781.4 kB	2,776.0 kB	[list of files]
armhf	1.54.1+dfsg-1	1,781.6 kB	2,768.0 kB	[list of files]
hppa (unofficial port)	1.54.1+dfsg-1	1,783.6 kB	2,790.0 kB	[list of files]
i386	1.54.1+dfsg-1	1,784.1 kB	2,796.0 kB	[list of files]
ia64 (unofficial port)	1.54.1+dfsg-1	1,783.4 kB	2,812.0 kB	[list of files]
m68k (unofficial port)	1.54.1+dfsg-1	1,781.8 kB	2,780.0 kB	[list of files]
mips64el	1.54.1+dfsg-1	1,781.3 kB	2,810.0 kB	[list of files]
ppc64 (unofficial port)	1.54.1+dfsg-1	1,785.2 kB	2,869.0 kB	[list of files]
ppc64el	1.54.1+dfsg-1	1,783.8 kB	2,805.0 kB	[list of files]
riscv64	1.54.1+dfsg-1+b1	1,784.0 kB	2,782.0 kB	[list of files]
s390x	1.54.1+dfsg-1	1,783.0 kB	2,789.0 kB	[list of files]
sh4 (unofficial port)	1.54.1+dfsg-1	1,781.9 kB	2,804.0 kB	[list of files]
sparc64 (unofficial port)	1.54.1+dfsg-1	1,782.0 kB	3,765.0 kB	[list of files]
x32 (unofficial port)	1.54.1+dfsg-1	1,784.3 kB	2,788.0 kB	[list of files]