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[ Source: gatb-core  ]

Package: gatb-core (1.4.2+dfsg-6)

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Genome Analysis Toolbox with de-Bruijn graph

The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see

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Download gatb-core

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 2,801.3 kB22,333.0 kB [list of files]
amd64 2,485.4 kB18,402.0 kB [list of files]
arm64 2,277.9 kB17,751.0 kB [list of files]
hppa (unofficial port) 2,450.3 kB17,911.0 kB [list of files]
i386 2,536.6 kB18,214.0 kB [list of files]
mips64el 2,386.6 kB26,762.0 kB [list of files]
ppc64 (unofficial port) 2,648.0 kB24,967.0 kB [list of files]
ppc64el 2,678.1 kB22,151.0 kB [list of files]
riscv64 (unofficial port) 2,510.1 kB16,210.0 kB [list of files]
s390x 2,236.9 kB19,291.0 kB [list of files]
sparc64 (unofficial port) 1,914.7 kB18,522.0 kB [list of files]
x32 (unofficial port) 2,424.5 kB15,733.0 kB [list of files]