Package: python3-pyspoa (0.3.2-1)

[ Source: python-pyspoa  ]

Python bindings to spoa

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

This package presents Python bindings for the spoa library

Other Packages Related to python3-pyspoa

• dep: libc6 (>= 2.32) [not i386]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.42) [i386]

• dep: libgcc-s1 (>= 3.0) [not armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armhf]

• dep: libspoa7.0.0 (>= 4.1.4) [amd64]

  SIMD partial order alignment library

  dep: libspoa7.0.0 (>= 4.1.5) [not amd64]

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3 (<< 3.15)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.13~)

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