Package: bifrost (1.3.5-2)

[ Source: bifrost  ]

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Other Packages Related to bifrost

• dep: libbifrost0 (>= 1.3.5)

  library for parallel construction, indexing and querying of de Bruijn graphs

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Architecture	Package Size	Installed Size	Files
amd64	533.0 kB	1,310.0 kB	[list of files]
arm64	504.5 kB	1,238.0 kB	[list of files]
ppc64el	548.9 kB	1,430.0 kB	[list of files]
riscv64	533.8 kB	1,014.0 kB	[list of files]
s390x	552.2 kB	1,382.0 kB	[list of files]