all options
buster  ] [  sid  ]
[ Source: trnascan-se  ]

Package: trnascan-se (2.0.0-3) [non-free]

Links for trnascan-se


Debian Resources:

Download Source Package trnascan-se:


External Resources:

Similar packages:

detection of transfer RNA genes in genomic sequence

tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

Other Packages Related to trnascan-se

  • depends
  • recommends
  • suggests
  • enhances

Download trnascan-se

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 146.6 kB706.0 kB [list of files]