Package: trinityrnaseq-examples (2.6.6+dfsg-6)

[ Source: trinityrnaseq  ]

RNA-Seq De novo Assembly common example and testing files

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

This package contains testing & example files.

Other Packages Related to trinityrnaseq-examples

• dep: coreutils

  GNU core utilities

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• rec: trinityrnaseq

  RNA-Seq De novo Assembly

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