all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ] [  experimental  ]
[ Source: jellyfish  ]

Package: jellyfish-examples (2.2.10-2)

Links for jellyfish-examples

Screenshot

Debian Resources:

Download Source Package jellyfish:

Maintainers:

External Resources:

Similar packages:

count k-mers in DNA sequences (examples for testing)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains examples to test the package

Other Packages Related to jellyfish-examples

  • depends
  • recommends
  • suggests
  • enhances

Download jellyfish-examples

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 491.1 kB1,999.0 kB [list of files]
arm64 419.4 kB1,843.0 kB [list of files]
mips64el 390.3 kB2,433.0 kB [list of files]
ppc64el 470.2 kB2,375.0 kB [list of files]