[ Source: gmap ]
Package: gmap (2019-01-24-1) [non-free]
Links for gmap
Debian Resources:
Download Source Package gmap:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Alexandre Mestiashvili (QA Page)
External Resources:
- Homepage [research-pub.gene.com]
Similar packages:
spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of
* known splice sites and identify novel splice sites. * known single-nucleotide polymorphisms (SNPs).GSNAP can align bisulfite-treated DNA.
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Download gmap
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 5,833.6 kB | 52,092.0 kB | [list of files] |