Package: discosnp (2.3.0-2)

[ Source: discosnp  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Other Packages Related to discosnp

• dep: gatb-core

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.8) [i386]

• dep: libgatbcore2 (>= 1.4.1) [amd64]

  dynamic library of the Genome Analysis Toolbox

  dep: libgatbcore2 (>= 1.4.1+git20181225.44d5a44+dfsg) [not amd64]

• dep: libgcc1 (>= 1:3.0) [not i386]

  GCC support library

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libhdf5-103

  Hierarchical Data Format 5 (HDF5) - runtime files - serial version

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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i386	781.0 kB	1,544.0 kB	[list of files]