Package: bcbio (1.1.2-3)

[ Source: bcbio  ]

toolkit for analysing high-throughput sequencing data

This package installs the command line tools of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.

A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Other Packages Related to bcbio

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-bcbio

  library for analysing high-throughput sequencing data

• sug: bcbio-doc

  Documentation for RNAseq-workflows of bcbio(-nextgen)

• sug: cwltool

  Common Workflow Language reference implementation

• sug: toil

  cross-platform workflow engine

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