all options
bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: presto  ]

Package: presto (0.6.2-1)

Links for presto

Screenshot

Debian Resources:

Download Source Package presto:

Maintainers:

External Resources:

Similar packages:

toolkit for processing B and T cell sequences

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

Other Packages Related to presto

  • depends
  • recommends
  • suggests
  • enhances

Download presto

Download for all available architectures
Architecture Package Size Installed Size Files
all 72.5 kB366.0 kB [list of files]