Package: samtools (1.16.1-1)

[ Source: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libhts3 (>= 1.16)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [not armel, armhf, i386, mipsel]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386, mipsel]

• sug: cwltool

  Common Workflow Language reference implementation

Download samtools

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	592.4 kB	1,304.0 kB	[list of files]
arm64	566.4 kB	1,580.0 kB	[list of files]
armel	558.8 kB	1,573.0 kB	[list of files]
armhf	561.4 kB	1,445.0 kB	[list of files]
i386	622.1 kB	1,417.0 kB	[list of files]
mips64el	572.9 kB	1,729.0 kB	[list of files]
mipsel	581.2 kB	1,659.0 kB	[list of files]
ppc64el	614.7 kB	1,836.0 kB	[list of files]
s390x	566.6 kB	1,332.0 kB	[list of files]