Package: samblaster (0.1.26-4)

[ Source: samblaster  ]

marks duplicates, extracts discordant/split reads

Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.

samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

Other Packages Related to samblaster

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

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Architecture	Package Size	Installed Size	Files
amd64	24.3 kB	62.0 kB	[list of files]
arm64	23.1 kB	85.0 kB	[list of files]
armel	22.8 kB	85.0 kB	[list of files]
armhf	22.8 kB	85.0 kB	[list of files]
i386	25.1 kB	61.0 kB	[list of files]
mips64el	25.9 kB	89.0 kB	[list of files]
mipsel	25.9 kB	87.0 kB	[list of files]
ppc64el	26.5 kB	86.0 kB	[list of files]
s390x	22.6 kB	57.0 kB	[list of files]