Package: liballelecount-perl (4.3.0-2)

[ Source: allelecount  ]

Perl interface to NGS copy number algorithms

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).

The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.

This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype.

Other Packages Related to liballelecount-perl

• dep: libconst-fast-perl

  facility for creating read-only scalars, arrays, and hashes

• dep: libdevel-cover-perl

  Perl tool for determining code coverage metrics

• dep: libfile-slurp-perl

  single call read & write file routines

• dep: libfile-which-perl

  Perl module for searching paths for executable programs

• dep: libipc-system-simple-perl

  Perl module to run commands simply, with detailed diagnostics

• dep: libjson-perl

  module for manipulating JSON-formatted data

• dep: libpod-coverage-perl

  checker for comprehensiveness of perl module documentation

• dep: libtest-fatal-perl

  module for testing code with exceptions

• dep: libtry-tiny-perl

  module providing minimalistic try/catch

• dep: perl

  Larry Wall's Practical Extraction and Report Language

Download liballelecount-perl

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	24.4 kB	81.0 kB	[list of files]