Package: bioperl (1.7.8-1)

[ Source: bioperl  ]

Perl tools for computational molecular biology

The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl.

The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian.

The suggested package enhances the manual pages.

Tags: Software Development: Perl Development, Libraries, Field: field::biology, field::biology:bioinformatics, Implemented in: Perl, Role: role::devel-lib, role::shared-lib

Other Packages Related to bioperl

• dep: libbio-perl-perl (= 1.7.8-1)

  BioPerl core perl modules

• dep: libtest-most-perl

  Perl module with the most commonly needed test functions and features

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: bioperl-run

  BioPerl wrappers: scripts

• rec: libace-perl

  Object-Oriented Access to ACEDB Databases

• rec: libapache-dbi-perl

  interface connecting Apache server to database via perl's DBI

• rec: libbio-perl-run-perl

  BioPerl wrappers: modules

• rec: libcache-cache-perl

  Managed caches of persistent information

• rec: libdbi-perl

  Perl Database Interface (DBI)

• rec: libgd-gd2-perl

  virtual package provided by libgd-perl

• rec: libhttp-message-perl

  perl interface to HTTP style messages

• rec: liblist-moreutils-perl

  Perl module with additional list functions not found in List::Util

• rec: libset-scalar-perl

  Perl interface for operations on finite sets

• rec: liburi-perl

  module to manipulate and access URI strings

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: libxml-simple-perl

  Perl module for reading and writing XML

• rec: libxml-twig-perl

  Perl module for processing huge XML documents in tree mode

• rec: libyaml-perl

  YAML Ain't Markup Language

• rec: perl-doc

  Perl documentation

• sug: groff-base

  GNU troff text-formatting system (base system components)

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