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[ Quellcode: t-coffee  ]

Paket: t-coffee (11.00.8cbe486-5)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Markierungen: Feld: Biologie, Bioinformatik, Implementiert in: implemented-in::c, interface::commandline, Rolle: Programm, Zweck: Hilfswerkzeug, Zweck: use::analysing, use::comparing, Unterstützt Formate: Benötige eine zusätzliche Markierung, works-with-format::plaintext, works-with::TODO

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arm64 1.752,5 kB3.559,0 kB [Liste der Dateien]
armel 1.713,4 kB3.506,0 kB [Liste der Dateien]
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mips 1.799,8 kB4.142,0 kB [Liste der Dateien]
mips64el 1.815,9 kB4.227,0 kB [Liste der Dateien]
mipsel 1.811,7 kB4.142,0 kB [Liste der Dateien]
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s390x 1.764,5 kB3.863,0 kB [Liste der Dateien]