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Package: molphy (2.3b3-5) [non-free]

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Program Package for MOLecular PHYlogenetics

ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language)

 NucML:  Maximum Likelihood Inference of Nucleic Acid Phylogeny
 ProtST: Basic Statistics of Protein Sequences
 NucST:  Basic Statistics of Nucleic Acid Sequences
 NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl)
 mollist:  get identifiers list        molrev:   reverse DNA sequences
 molcat:   concatenate sequences       molcut:   get partial sequences
 molmerge: merge sequences             nuc2ptn:  DNA -> Amino acid
 rminsdel: remove INS/DEL sites        molcodon: get specified codon sites
 molinfo:  get varied sites            mol2mol:  MOLPHY format beautifer
 inl2mol:  Interleaved -> MOLPHY       mol2inl:  MOLPHY -> Interleaved
 mol2phy:  MOLPHY -> Sequential        phy2mol:  Sequential -> MOLPHY
 must2mol: MUST -> MOLPHY              etc.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 276.1 kB876.0 kB [list of files]
armel 307.2 kB912.0 kB [list of files]
i386 236.0 kB816.0 kB [list of files]
ia64 410.4 kB1,432.0 kB [list of files]
mips 310.4 kB1,024.0 kB [list of files]
mipsel 311.2 kB984.0 kB [list of files]
powerpc 299.7 kB908.0 kB [list of files]
s390 268.2 kB856.0 kB [list of files]
sparc 268.5 kB840.0 kB [list of files]