Paket: libbio-db-gff-perl (1.7.4-1)

[ Quellcode: libbio-db-gff-perl  ]

Storage and retrieval of sequence annotation data

Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.

The following operations are supported by this module:

 - retrieving a segment of sequence based on the ID of a landmark

 - retrieving the DNA from that segment

 - finding all annotations that overlap with the segment

 - finding all annotations that are completely contained within the

segment

 - retrieving all annotations of a particular type, either within a

segment, or globally

 - conversion from absolute to relative coordinates and back again,

using any arbitrary landmark for the relative coordinates

 - using a sequence segment to create new segments based on relative

offsets

Andere Pakete mit Bezug zu libbio-db-gff-perl

• dep: libapache-dbi-perl

  Schnittstelle zur Verbindung des Apache-Servers zu Datenbanken mittels Perls DBI

• dep: libbio-db-biofetch-perl

  Database object interface to BioFetch retrieval

• dep: libbio-perl-perl

  Grundlegende Perl-Module von BioPerl

• dep: libcgi-pm-perl

  Modul für CGI-Anwendungen (Common Gateway Interface)

• dep: perl

  Larry Wall's Practical Extraction und Report Language

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