Paket: r-cran-seurat (5.0.1-1 und andere)

[ Quellcode: r-cran-seurat  ]

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

Andere Pakete mit Bezug zu r-cran-seurat

• dep: libc6 (>= 2.32) [nicht alpha, ia64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libc6.1 (>= 2.32) [alpha]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 11) [x32]

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

  dep: libstdc++6 (>= 13.1) [nicht x32]

• dep: libunwind8 [ia64]

  Bibliothek zur Ermittlung der Aufrufkette eines Programms - Laufzeit

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-cran-cluster

  GNU-R-Paket zur Cluster-Analyse von Rousseeuw et al

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-fastdummies [nicht x32]

  fast creation of dummy columns and rows from categorical variables

• dep: r-cran-fitdistrplus

  support fit of parametric distribution

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-generics (>= 0.1.3) [nicht x32]

  GNU R common S3 generics not provided by base R methods

• dep: r-cran-ggplot2 (>= 3.3.0)

  Implementierung der »Grammar of Graphics«

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-ggridges

  Ridgeline Plots in 'ggplot2'

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-ica

  Independent Component Analysis

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-kernsmooth

  GNU-R-Paket für Kernel-Regression und Dichteschätzung

• dep: r-cran-leiden (>= 0.3.1)

  GNU R implementation of Leiden clustering algorithm

• dep: r-cran-lifecycle [nicht x32]

  manage the life cycle of your GNU R package functions

• dep: r-cran-lmtest

  GNU R package for diagnostic checking in linear models

• dep: r-cran-mass

  GNU-R-Paket für MASS von Venables und Ripley

• dep: r-cran-matrix (>= 1.5-0)

  GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-miniui

  Shiny UI Widgets for Small Screens

• dep: r-cran-patchwork

  GNU R the composer of plots

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• dep: r-cran-plotly (>= 4.9.0)

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-png

  GNU R package to read and write PNG images

• dep: r-cran-progressr

  GNU R inclusive, unifying API for progress updates

• dep: r-cran-purrr [nicht x32]

  GNU R functional programming tools

• dep: r-cran-rann

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcpp (>= 1.0.7)

  GNU-R-Paket für die nahtlose Verflechtung von R und C++

• dep: r-cran-rcppannoy (>= 0.0.18)

  Rcpp bindings for Annoy (approximate nearest neighbors)

• dep: r-cran-rcppeigen

  GNU R package for Eigen templated linear algebra

• dep: r-cran-rcpphnsw [nicht x32]

  R bindings for a Library for Approximate Nearest Neighbors

• dep: r-cran-rcppprogress

  interruptible progress bar for C++ in GNU R packages

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rocr

  GNU R package to prepare and display ROC curves

• dep: r-cran-rspectra [nicht x32]

  GNU R solvers for large-scale eigenvalue and SVD problems

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-scales

  Skalierungsfunktionen zur Visualisierung

• dep: r-cran-scattermore (>= 0.7) [x32]

  GNU R scatterplots with more points

  dep: r-cran-scattermore (>= 1.2) [nicht x32]

• dep: r-cran-sctransform (>= 0.3.5) [x32]

  Variance Stabilizing Transformations for Single Cell UMI Data

  dep: r-cran-sctransform (>= 0.4.1) [nicht x32]

• dep: r-cran-seuratobject (>= 4.1.3) [x32]

  GNU R data structures for single cell data

  dep: r-cran-seuratobject (>= 5.0.0) [nicht x32]

• dep: r-cran-shiny

  GNU R web application framework

• dep: r-cran-spatstat.explore

  GNU R exploratory data analysis for the 'spatstat' family

• dep: r-cran-spatstat.geom

  GNU R geometrical functionality of the 'spatstat' package

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-uwot (>= 0.1.10) [nicht x32]

  GNU R uniform manifold approximation and projection (UMAP)

  dep: r-cran-uwot (>= 0.1.14) [x32]

• rec: r-bioc-biobase [nicht x32]

  base functions for Bioconductor

• rec: r-bioc-biocgenerics [nicht x32]

  generic functions for Bioconductor

• rec: r-bioc-delayedarray [nicht x32]

  BioConductor delayed operations on array-like objects

• rec: r-bioc-deseq2 [nicht x32]

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-genomeinfodb [nicht x32]

  BioConductor utilities for manipulating chromosome identifiers

• rec: r-bioc-genomicranges [nicht x32]

  BioConductor representation and manipulation of genomic intervals

• rec: r-bioc-iranges [nicht x32]

  GNU R low-level containers for storing sets of integer ranges

• rec: r-bioc-limma [nicht x32]

  linear models for microarray data

• rec: r-bioc-monocle [nicht x32]

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-bioc-rtracklayer [nicht x32]

  GNU R interface to genome browsers and their annotation tracks

• rec: r-bioc-s4vectors [nicht x32]

  BioConductor S4 implementation of vectors and lists

• rec: r-bioc-singlecellexperiment [nicht x32]

  S4 Classes for Single Cell Data

• rec: r-bioc-summarizedexperiment [nicht x32]

  BioConductor assay container

• rec: r-cran-ape [nicht x32]

  GNU R package for Analyses of Phylogenetics and Evolution

• rec: r-cran-data.table [nicht x32]

  GNU R - Erweiterung von data.frame()

• rec: r-cran-ggrastr [nicht x32]

  Bioconductor rasterize layers for 'ggplot2'

• rec: r-cran-hdf5r

  GNU R interface to the 'HDF5' binary data format

• rec: r-cran-metap [nicht x32]

  Meta-Analysis of Significance Values

• rec: r-cran-mixtools [nicht x32]

  GNU R tools for analyzing finite mixture models

• rec: r-cran-r.utils [nicht x32]

  GNU R various programming utilities

• rec: r-cran-rsvd [nicht x32]

  Randomized Singular Value Decomposition

• rec: r-cran-testthat

  GNU R testsuite

• rec: r-cran-vgam [nicht x32]

  GNU R package for estimating vector generalized additive models

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• sug: r-cran-data.table

  GNU R - Erweiterung von data.frame()

• sug: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• sug: r-cran-metap

  Meta-Analysis of Significance Values

• sug: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-rsvd

  Randomized Singular Value Decomposition

• sug: r-cran-vgam

  GNU R package for estimating vector generalized additive models

r-cran-seurat herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
alpha (inoffizielle Portierung)	5.0.1-1	3.448,8 kB	4.137,0 kB	[Liste der Dateien]
amd64	5.0.1-1	3.477,7 kB	4.094,0 kB	[Liste der Dateien]
arm64	5.0.1-1	3.456,9 kB	4.074,0 kB	[Liste der Dateien]
armel	5.0.1-1	3.452,9 kB	4.033,0 kB	[Liste der Dateien]
armhf	5.0.1-1	3.451,9 kB	3.937,0 kB	[Liste der Dateien]
hppa (inoffizielle Portierung)	5.0.1-1	3.461,9 kB	4.112,0 kB	[Liste der Dateien]
i386	5.0.1-1	3.484,6 kB	4.104,0 kB	[Liste der Dateien]
ia64 (inoffizielle Portierung)	5.0.1-1	3.484,1 kB	4.397,0 kB	[Liste der Dateien]
mips64el	5.0.1-1	3.449,6 kB	4.161,0 kB	[Liste der Dateien]
ppc64 (inoffizielle Portierung)	5.0.1-1	3.470,0 kB	4.206,0 kB	[Liste der Dateien]
ppc64el	5.0.1-1	3.482,4 kB	4.202,0 kB	[Liste der Dateien]
riscv64	5.0.1-1+b1	3.467,7 kB	3.990,0 kB	[Liste der Dateien]
s390x	5.0.1-1	3.477,5 kB	4.122,0 kB	[Liste der Dateien]
sparc64 (inoffizielle Portierung)	5.0.1-1	3.434,8 kB	4.720,0 kB	[Liste der Dateien]
x32 (inoffizielle Portierung)	4.3.0-1	2.990,8 kB	3.547,0 kB	[Liste der Dateien]