Paket: samblaster (0.1.24-2)

[ Quellcode: samblaster  ]

marks duplicates, extracts discordant/split reads

Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.

samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

Andere Pakete mit Bezug zu samblaster

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.8) [armhf, i386]

• dep: libgcc1 (>= 1:3.5) [armhf]

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 5)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

samblaster herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	22,8 kB	57,0 kB	[Liste der Dateien]
arm64	21,9 kB	57,0 kB	[Liste der Dateien]
armhf	20,7 kB	45,0 kB	[Liste der Dateien]
i386	23,7 kB	57,0 kB	[Liste der Dateien]