Paket: progressivemauve (1.2.0+4713+dfsg-4)

[ Quellcode: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Andere Pakete mit Bezug zu progressivemauve

• dep: libboost-filesystem1.67.0

  Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++

• dep: libboost-iostreams1.67.0

  Boost.Iostreams-Bibliothek

• dep: libboost-program-options1.67.0

  C++-Bibliothek für Programmoptionen

• dep: libboost-system1.67.0

  Betriebssystemsbibliothek (etwa Unterstützung der Diagnostik)

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  GCC Support-Bibliothek

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libgenome0 [nicht amd64]

  toolkit for developing bioinformatic related software

  dep: libgenome0 (>= 1.3.11+svn20110227.4616) [amd64]

• dep: libmems1

  library to support DNA string matching and comparative genomics

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• enh: mauve-aligner

  multiple genome alignment

progressivemauve herunterladen

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i386	816,7 kB	5.033,0 kB	[Liste der Dateien]