Paket: dotter (4.44.1+dfsg-3)

[ Quellcode: seqtools  ]

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Markierungen: GUI-Baukasten: GTK

Andere Pakete mit Bezug zu dotter

• dep: libatk1.0-0 (>= 1.12.4)

  ATK - Werkzeugsammlung zur Barrierefreiheit

• dep: libc6 (>= 2.14) [amd64]

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  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

• dep: libcairo2 (>= 1.2.4)

  2D-Vektorgrafikbibliothek Cairo

• dep: libcurl4 (>= 7.16.2)

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• dep: libfontconfig1 (>= 2.12.6)

  Generische Schriftkonfigurationsbibliothek - Laufzeit

• dep: libfreetype6 (>= 2.2.1)

  Schrift-Engine FreeType 2, Laufzeitbibliothek

• dep: libgbtools0

  library for visualising sequence alignments

• dep: libgcc1 (>= 1:3.0) [nicht armhf]

  GCC Support-Bibliothek

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgdk-pixbuf2.0-0 (>= 2.22.0)

  Bibliothek GDK-PixBuf

• dep: libglib2.0-0 (>= 2.22.0)

  GLib - Bibliothek von C-Routinen

• dep: libgtk2.0-0 (>= 2.12.0)

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• dep: libjsoncpp1 (>= 1.7.4)

  library for reading and writing JSON for C++

• dep: libpango-1.0-0 (>= 1.14.0)

  Gestaltung und Anzeige internationalisierten Textes

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Gestaltung und Anzeige internationalisierten Textes

• dep: libpangoft2-1.0-0 (>= 1.14.0)

  Gestaltung und Anzeige internationalisierten Textes

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

dotter herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	206,1 kB	409,0 kB	[Liste der Dateien]
arm64	196,7 kB	397,0 kB	[Liste der Dateien]
armhf	188,2 kB	299,0 kB	[Liste der Dateien]
i386	215,1 kB	439,0 kB	[Liste der Dateien]