Paket: sprai (0.9.9.23+dfsg-2)

[ Quellcode: sprai  ]

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Andere Pakete mit Bezug zu sprai

• dep: libc6 (>= 2.7)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: ncbi-blast+ (>= 2.2.27)

  next generation suite of BLAST sequence search tools

• dep: perl

  Larry Wall's Practical Extraction und Report Language

• dep: time

  GNU-Programm »time« zur Messung des CPU-Ressourcenverbrauchs

• sug: make

  Werkzeug zur Steuerung der Kompilierung

• sug: pbalign

  map Pacific Biosciences reads to reference DNA sequences

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

• sug: pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files

sprai herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
i386	1.480,1 kB	1.715,0 kB	[Liste der Dateien]