Paket: r-bioc-tfbstools (1.20.0+dfsg-1)

[ Quellcode: r-bioc-tfbstools  ]

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Andere Pakete mit Bezug zu r-bioc-tfbstools

• dep: libc6 (>= 2.17) [arm64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.4) [nicht arm64]

• dep: r-api-3.5

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-base-core (>= 3.5.1-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-biobase (>= 2.28)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.14.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.2.21)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.36.4)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.36.3)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-cner (>= 1.4.0)

  CNE Detection and Visualization

• dep: r-bioc-dirichletmultinomial (>= 1.10.0)

  Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

• dep: r-bioc-genomeinfodb (>= 1.6.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.20.6)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.2.7)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rtracklayer (>= 1.28.10)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-seqlogo (>= 1.34.0)

  GNU R sequence logos for DNA sequence alignments

• dep: r-bioc-xvector (>= 0.8.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-catools (>= 1.17.1)

  GNU R package providing various utility functions

• dep: r-cran-dbi (>= 0.6)

  GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit

• dep: r-cran-gtools (>= 3.5.0)

  GNU R package with R programming tools by Greg Warnes et al

• dep: r-cran-rsqlite (>= 1.0.0)

  R-Datenbank-Schnittstellentreiber für SQLite

• dep: r-cran-tfmpvalue (>= 0.0.5)

  GNU R P-Value Computation for Position Weight Matrices

• dep: r-cran-xml (>= 3.98-1.3)

  GNU R package for XML parsing and generation

• sug: r-cran-knitr (>= 1.11)

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-testthat

  GNU R testsuite

r-bioc-tfbstools herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	875,5 kB	1.741,0 kB	[Liste der Dateien]
arm64	875,1 kB	1.737,0 kB	[Liste der Dateien]
armhf	874,9 kB	1.736,0 kB	[Liste der Dateien]
i386	877,5 kB	1.734,0 kB	[Liste der Dateien]