Paket: freebayes (1.2.0-2)

[ Quellcode: freebayes  ]

Bayesian haplotype-based polymorphism discovery and genotyping

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

Andere Pakete mit Bezug zu freebayes

• dep: libbamtools2.5.1

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.14)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libfml0

  library for assembling Illumina short reads in small regions

• dep: libgcc1 (>= 1:3.0)

  GCC Support-Bibliothek

• dep: libhts2 (>= 1.0)

  C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate

• dep: libjsoncpp1 (>= 1.7.4)

  library for reading and writing JSON for C++

• dep: libseqlib1 (>= 1.1.2+dfsg)

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libssw0

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libtabixpp0

  C++ wrapper to tabix indexer

• dep: libvcflib1

  C++ library for parsing and manipulating VCF files

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• rec: parallel

  build and execute command lines from standard input in parallel

freebayes herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	997,6 kB	3.441,0 kB	[Liste der Dateien]