Paket: mindthegap (2.2.2-2)

[ Quellcode: mindthegap  ]

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

Andere Pakete mit Bezug zu mindthegap

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.8) [i386, mips64el, s390x]

• dep: libgatbcore3 (>= 1.4.2+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0) [nicht i386]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libhdf5-103-1

  Hierarchisches Datenformat 5 (HDF5) - C-Laufzeitdateien - serielle Version

• dep: libstdc++6 (>= 9)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	227,5 kB	1.004,0 kB	[Liste der Dateien]
arm64	204,1 kB	944,0 kB	[Liste der Dateien]
i386	246,1 kB	1.031,0 kB	[Liste der Dateien]
mips64el	190,4 kB	1.087,0 kB	[Liste der Dateien]
ppc64el	225,7 kB	1.112,0 kB	[Liste der Dateien]
s390x	207,3 kB	996,0 kB	[Liste der Dateien]