Paket: fastahack (1.0.0+dfsg-7)

[ Quellcode: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andere Pakete mit Bezug zu fastahack

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [nicht amd64, arm64, ppc64el]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [nicht amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

fastahack herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	12,1 kB	40,0 kB	[Liste der Dateien]
arm64	11,5 kB	40,0 kB	[Liste der Dateien]
armel	11,5 kB	35,0 kB	[Liste der Dateien]
armhf	11,5 kB	35,0 kB	[Liste der Dateien]
i386	12,5 kB	43,0 kB	[Liste der Dateien]
mips64el	11,8 kB	41,0 kB	[Liste der Dateien]
mipsel	11,8 kB	40,0 kB	[Liste der Dateien]
ppc64el	12,1 kB	84,0 kB	[Liste der Dateien]
s390x	11,7 kB	40,0 kB	[Liste der Dateien]