Paket: bio-vcf (0.9.5-2)

[ Quellcode: bio-vcf  ]

domain specific language (DSL) for processing the VCF format

Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g.

 sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4

Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.

Andere Pakete mit Bezug zu bio-vcf

• dep: ruby

  Interpreter für die objektorientierte Skriptsprache Ruby (Standardversion)

  oder ruby-interpreter

  Paket nicht verfügbar

bio-vcf herunterladen

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