Package: mmseqs2 (15-6f452+ds-2 and others)

[ Source: mmseqs2  ]

Ultra hurtig og sensitiv proteinsøgning og klyngeopbygning

MMseqs2 (Many-against-Many sequence searching) er en programpakke til at søge og klyngeopbygge store protein/nukleotid-sekvenssæt. MMseqs2 er udgivet under en GPL-licens implementeret i C++ for Linux, MacOS og (som betaversion, via cygwin) Windows. Programmet er designet til afvikling på flere kerner og servere og har rigtig god skalering. MMseqs2 kan afvikle 10.000 gange hurtigere end BLAST. Med 100 gange dennes hastighed opnår den næsten den samme følsomhed. Kan udføre profilsøgninger med den samme sensitivitet som PSI-BLAST med over 400 gange dennes hastighed.

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Download mmseqs2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	12-113e3+ds-3+b1	4,605.9 kB	9,018.0 kB	[list of files]
amd64	15-6f452+ds-2+b3	23,674.3 kB	71,094.0 kB	[list of files]
arm64	15-6f452+ds-2+b3	6,973.3 kB	15,864.0 kB	[list of files]
hppa (unofficial port)	12-113e3+ds-2+b1	4,494.2 kB	7,857.0 kB	[list of files]
ia64 (unofficial port)	15-6f452+ds-2	7,602.6 kB	23,212.0 kB	[list of files]
loong64 (unofficial port)	15-6f452+ds-2+b2	7,096.7 kB	16,376.0 kB	[list of files]
m68k (unofficial port)	12-113e3+ds-2+b1	4,368.5 kB	7,775.0 kB	[list of files]
mips64el	15-6f452+ds-2+b3	6,932.1 kB	16,790.0 kB	[list of files]
ppc64 (unofficial port)	12-113e3+ds-2+b1	4,402.7 kB	8,061.0 kB	[list of files]
ppc64el	15-6f452+ds-2+b3	7,195.4 kB	17,208.0 kB	[list of files]
riscv64	15-6f452+ds-2+b4	7,330.3 kB	15,556.0 kB	[list of files]
sh4 (unofficial port)	12-113e3+ds-3+b1	4,800.2 kB	7,324.0 kB	[list of files]
sparc64 (unofficial port)	11-e1a1c+ds-4	4,158.7 kB	7,066.0 kB	[list of files]
x32 (unofficial port)	12-113e3+ds-3+b1	4,529.1 kB	7,777.0 kB	[list of files]